PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30220_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 445aa    MW: 49362.3 Da    PI: 9.0227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30220_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-054363323
                                ETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                C++Cgk F r  nL+ H r H
  Cotton_A_30220_BGI-A2_v1.0 43 CEICGKGFQRDQNLQLHRRGH 63
                                *******************88 PP

2zf-C2H213.60.0002117139123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC++C+k++  +s+ k H +t+
  Cotton_A_30220_BGI-A2_v1.0 117 WKCEKCSKRYAVQSDWKAHSKTC 139
                                 58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0764163IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.03E-64163No hitNo description
Gene3DG3DSA:3.30.160.607.7E-54163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4894163IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SMARTSM0035512082112IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-5105138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.03E-6112137No hitNo description
SMARTSM00355130117137IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLETMAEEPV SNGFMQNPVP GSNNPPVAKR KRNLPGTPGK FLCEICGKGF QRDQNLQLHR  60
RGHNLPWKLK QRTTKEVRKR VYVCPEKTCV HHHPSRALGD LTGIKKHFYR KHGEKKWKCE  120
KCSKRYAVQS DWKAHSKTCG TREYKCDCGT LFSRRDSFIT HRAFCDALAE ETARVNAASS  180
MHSLATTNFS YQLMGNPLDT GMPQHFPSIF KTISSNDETI DQTRRGFSLW MGQAPQGHDS  240
IGKSLQEIQQ FGSLNSGSMY SDPLVSTSNP PASDYQLNWV FGNKVSSGNA EDQLTSTSLP  300
LNNNVKENGT QLVSIPSLFS TQHQSQQTPS FSMSATALLQ KAAQIGATST DTSFLGSFGT  360
KCSNSQVQDG SKYSDLYVSN TQTTTLGCDM ENSANDISTL NQLQMYPAKR RYLQNEESGG  420
GQTRDFLGVG VQQAICHPSS INGWI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479657.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA61e-139IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A0D2PW720.0A0A0D2PW72_G
STRINGVIT_12s0028g03030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-141C2H2 family protein